Setting up multiple-subdomain HTTPS with nginx, acme-tiny, and Lets Encrypt

This guide briefly describes aspects of setting up nginx and acme-tiny to automatically register and renew multiple subdomains.

acme-tiny (Debian, Ubuntu, Arch, OpenBSD, FreeBSD, and Python Package Index) provides a more verifiable and more easily customizable than the default Let’s Encrypt client. This proves especially useful in less mainstream contexts where either the main client works magically or fails magically, but tends to offer little between those two outcomes.

The first step is to create a multidomain CSR which informs Let’s Encrypt of which domains it should provide certificates for. When adding or removing subdomains, this needs to be altered:
# OpenSSL configuration to generate a new key with signing requst for a x509v3
# multidomain certificate
# openssl req -config bla.cnf -new | tee csr.pem
# or
# openssl req -config bla.cnf -new -out csr.pem
[ req ]
default_bits = 4096
default_md = sha512
default_keyfile = key.pem
prompt = no
encrypt_key = no

# base request
distinguished_name = req_distinguished_name

# extensions
req_extensions = v3_req

# distinguished_name
[ req_distinguished_name ]
countryName = "SE"
stateOrProvinceName = "Sollentuna"
organizationName = "Direct Connect Network Foundation"
commonName = ""

# req_extensions
[ v3_req ]
subjectAltName =,

Then, when one is satisfies with one’s changes:
openssl req -new -key domain.key -config ~/dcbase_openssl.cnf > domain.csr
in the appropriate directory to regenerate a CSR based on this configuration. One does not have to change this CSR unless the set of subdomains or other information contained within also changes. Simply renewing certificates does not require regenerating domain.csr.

Having created a CSR, one then needs to ensure Let’s Encrypt knows where to find it. The ACME protocol Let’s Encrypt uses specifies that this should be /.well-known/acme-challenge/ and per acme-tiny’s documentation:
location /.well-known/acme-challenge/ {
alias $appropriate_challenge_location;

allow all;
log_not_found off;
access_log off;

try_files $uri =404;

Where this needs to be accessible via ordinary HTTP, port 80, to work most conveniently, even if the entire rest of the site is HTTPS-only. Furthermore, this needs to hold even for otherwise dynamically generated sites — e.g.,,,, and would all need to point to that same challenge location, even if disparate PHP CMSes generate each or they ordinarily redirect to other sites (such as Google Drive).

If this works, then one sees:
Parsing account key...
Parsing CSR...
Registering account...
Already registered!
Verifying verified!
Verifying verified!
Signing certificate...
Certificate signed!

When running acme-tiny.

Once this works reliably, the whole process should be run automatically as a cron job often enough to stay ahead of Let’s Encrypt’s 90-day cycle. However, one cannot renew too often:

The main limit is Certificates per Registered Domain (20 per week). A registered domain is, generally speaking, the part of the domain you purchased from your domain name registrar. For instance, in the name, the registered domain is In, the registered domain is We use the Public Suffix List to calculate the registered domain.

If you have a lot of subdomains, you may want to combine them into a single certificate, up to a limit of 100 Names per Certificate. Combined with the above limit, that means you can issue certificates containing up to 2,000 unique subdomains per week. A certificate with multiple names is often called a SAN certificate, or sometimes a UCC certificate.

Once Let’s Encrypt certificate renewal’s configured, Strong Ciphers for Apache, nginx and Lighttpd and BetterCrypto provide reasonable recommendations, while BetterCrypto’s Crypto Hardening guide discusses more deeply rationales behind these choices.

Finally, SSL Server Test and Analyse your HTTP response headers offer sanity checks for multiple successfully secured subdomains served by nginx over HTTPS using Let’s Encrypt certificates.

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